A simple electrostatic model applicable to biomolecular recognition

An exact, analytic solution for a simple electrostatic model applicable to biomolecular recognition is presented. In the model, a layer of high dielectric constant material (representative of the solvent, water) whose thickness may vary separates two regions of low dielectric constant material (representative of proteins, DNA, RNA, or similar materials), in each of which is embedded a point charge. For identical charges, the presence of the screening layer always lowers the energy compared to the case of point charges in an infinite medium of low dielectric constant. Somewhat surprisingly, the presence of a sufficiently thick screening layer also lowers the energy compared to the case of point charges in an infinite medium of high dielectric constant. For charges of opposite sign, the screening layer always lowers the energy compared to the case of point charges in an infinite medium of either high or low dielectric constant. The behavior of the energy leads to a substantially increased repulsive force between charges of the same sign. The repulsive force between charges of opposite signs is weaker than in an infinite medium of low dielectric constant material but stronger than in an infinite medium of high dielectric constant material. The presence of this behavior, which we name asymmetric screening, in the simple system presented here confirms the generality of the behavior that was established in a more complicated system of an arbitrary number of charged dielectric spheres in an infinite solvent.Comment: 15 pages, 6 figure

EMRI corrections to the angular velocity and redshift factor of a mass in circular orbit about a Kerr black hole

This is the first of two papers on computing the self-force in a radiation gauge for a particle moving in circular, equatorial orbit about a Kerr black hole. In the EMRI (extreme-mass-ratio inspiral) framework, with mode-sum renormalization, we compute the renormalized value of the quantity $h_{\alpha\beta}u^\alpha u^\beta$, gauge-invariant under gauge transformations generated by a helically symmetric gauge vector; and we find the related order $\frak{m}$ correction to the particle's angular velocity at fixed renormalized redshift (and to its redshift at fixed angular velocity). The radiative part of the perturbed metric is constructed from the Hertz potential which is extracted from the Weyl scalar by an algebraic inversion\cite{sf2}. We then write the spin-weighted spheroidal harmonics as a sum over spin-weighted spherical harmonics and use mode-sum renormalization to find the renormalization coefficients by matching a series in $L=\ell+1/2$ to the large-$L$ behavior of the expression for $H := \frac12 h_{\alpha\beta}u^\alpha u^\beta$. The non-radiative parts of the perturbed metric associated with changes in mass and angular momentum are calculated in the Kerr gauge

A modification of the Chen-Nester quasilocal expressions

Chen and Nester proposed four boundary expressions for the quasilocal quantities using the covariant Hamiltonian formalism. Based on these four expressions, there is a simple generalization that one can consider, so that a two parameter set of boundary expressions can be constructed. Using these modified expressions, a nice result for gravitational energy-momentum can be obtained in holonomic frames.Comment: 11 page

Entanglement Energetics in the Ground State

We show how many-body ground state entanglement information may be extracted from sub-system energy measurements at zero temperature. A precise relation between entanglement and energy fluctuations is demonstrated in the weak coupling limit. Examples are given with the two-state system and the harmonic oscillator, and energy probability distributions are calculated. Comparisons made with recent qubit experiments show this type of measurement provides another method to quantify entanglement with the environment.Comment: 7 pages, 3 figures, Conference proceeding for the Physics of Quantum Electronics; Utah, USA, January 200

Continuum coupled cluster expansion

We review the basics of the coupled-cluster expansion formalism for numerical solutions of the many-body problem, and we outline the principles of an approach directed towards an adequate inclusion of continuum effects in the associated single-energy spectrum. We illustrate our findings by considering the simple case of a single-particle quantum mechanics problem.Comment: 16 pages, 1 figur

Macroscopic quantum jumps and entangled state preparation

Recently we predicted a random blinking, i.e. macroscopic quantum jumps, in the fluorescence of a laser-driven atom-cavity system [Metz et al., Phys. Rev. Lett. 97, 040503 (2006)]. Here we analyse the dynamics underlying this effect in detail and show its robustness against parameter fluctuations. Whenever the fluorescence of the system stops, a macroscopic dark period occurs and the atoms are shelved in a maximally entangled ground state. The described setup can therefore be used for the controlled generation of entanglement. Finite photon detector efficiencies do not affect the success rate of the state preparation, which is triggered upon the observation of a macroscopic fluorescence signal. High fidelities can be achieved even in the vicinity of the bad cavity limit due to the inherent role of dissipation in the jump process.Comment: 14 pages, 12 figures, proof of the robustness of the state preparation against parameter fluctuations added, figure replace

Fermion Condensate and Vacuum Current Density Induced by Homogeneous and Inhomogeneous Magnetic Fields in (2+1)-Dimensions

We calculate the condensate and the vacuum current density induced by external static magnetic fields in (2+1)-dimensions. At the perturbative level, we consider an exponentially decaying magnetic field along one cartesian coordinate. Non-perturbatively, we obtain the fermion propagator in the presence of a uniform magnetic field by solving the Schwinger-Dyson equation in the rainbow-ladder approximation. In the large flux limit, we observe that both these quantities, either perturbative (inhomogeneous) and non-perturbative (homogeneous), are proportional to the external field, in agreement with early expectations.Comment: 8 pages, 2 figures. Accepted for publication in Phys. Rev.

Microscopic Theory of the Single Impurity Surface Kondo Resonance

We develop a microscopic theory of the single impurity Kondo effect on a metallic surface. We calculate the hybridization energies for the Anderson Hamiltonian of a magnetic impurity interacting with surface and bulk states and show that, contrary to the Kondo effect of an impurity in the bulk, the hybridization matrix elements are strongly dependent on the momentum around the Fermi surface. Furthermore, by calculating the tunneling conductance of a scanning tunneling microscope (STM), we show that when the magnetic impurity is located at a surface the Kondo effect can occur with equal strength between bulk and surface states. We compare our results with recent experiments of Co impurities in Cu(111) and Cu(100) surfaces and find good quantitative agreement.Comment: New version of the original manuscript with extended discussions on the problem of wavefunction orthogonality, the limitations of the theory, more figures related to the STM experiments, and one correction to an earlier result. Accepted for publication in Phys.Rev.

Collective phenomena in quasi-two-dimensional fermionic polar molecules: band renormalization and excitons

We theoretically analyze a quasi-two-dimensional system of fermionic polar molecules in a harmonic transverse confining potential. The renormalized energy bands are calculated by solving the Hartree-Fock equation numerically for various trap and dipolar interaction strengths. The inter-subband excitations of the system are studied in the conserving time-dependent Hartree-Fock (TDHF) approximation from the perspective of lattice modulation spectroscopy experiments. We find that the excitation spectrum consists of both inter-subband particle-hole excitation continuums and anti-bound excitons, arising from the anisotropic nature of dipolar interactions. The excitonic modes capture the majority of the spectral weight. We also evaluate the inter-subband transition rates in order to investigate the nature of the excitonic modes and find that they are anti-bound states formed from particle-hole excitations arising from several subbands. Our results indicate that the excitonic effects are present for interaction strengths and temperatures accessible in current experiments with polar molecules.Comment: 21 pages, 12 figure

Can quarkonia survive deconfinement ?

We study quarkonium correlators and spectral functions at zero and finite temperature in QCD with only heavy quarks using potential models combined with perturbative QCD. First, we show that this approach can describe the quarkonium correlation function at zero temperature. Using a class of screened potentials based on lattice calculations of the static quark-antiquark free energy we calculate spectral functions at finite temperature. We find that all quarkonium states, with the exception of the $1S$ bottomonium, dissolve in the deconfined phase at temperatures smaller than $1.5T_c$, in contradiction with the conclusions of recent studies. Despite this the temperature dependence of the quarkonium correlation functions calculated on the lattice is well reproduced in our model. We also find that even in the absence of resonances the spectral function at high temperatures is significantly enhanced over the spectral function corresponding to free quark antiquark propagation.Comment: Version accepted in Phys. Rev. D, 20 pages, 25 figure